Programming DNA Circuits

Visual DSD

• Online HTML5 (opens in new tab) (older versions: 2019-03-07 (opens in new tab), 2019-03-01 (opens in new tab))
• Downloadable HTML5 (opens in new tab)
• User Manual

Acknowledgements

• Visual DSD was developed by Carlo Spaccasassi, Matthew Lakin, Filippo Polo, Simon Youssef, Kathryn Gray, Rasmus Petersen, Colin Gravill, Neil Dalchau and Andrew Phillips at Microsoft Research.
• Luca Cardelli (opens in new tab) assisted with the design of the DSD language and extensive testing of DSD. Erik Winfree (opens in new tab) and his group have provided valuable feedback on DSD, together with Georg Seelig (opens in new tab) and his group.
• The core DSD language was developed in F# (opens in new tab). It uses Dynamic Data Display (opens in new tab) for visualising simulation plots and Microsoft Automatic Graph Layout for visualising networks.

Kaemika

• A chemical reaction and protocol simulator developed by Luca Cardelli (opens in new tab). Available from Luca’s web page (opens in new tab).

Silverlight Visual DSD (no longer supported)

• BETA v2016-0312 (opens in new tab). (Manual (opens in new tab), Browser Compatibility (opens in new tab)); Command-line version (opens in new tab) (Readme (opens in new tab)); Archive (v2015-0325 (opens in new tab))
• MAIN v2014-0219 (opens in new tab). Requires Silverlight 4.0 (opens in new tab) for Windows or Mac.
• Documentation: Tutorial (opens in new tab), Manual (opens in new tab), Browser Compatibility (opens in new tab) and Release Notes (opens in new tab).
• Command-line simulator: Windows (opens in new tab), OS X (opens in new tab) and OCaml Bytecode (opens in new tab).
• Archive: v2013-0214 (opens in new tab); v2012-0920 (opens in new tab); v2011-0721 (opens in new tab)