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Medical, health, and genomics

Digital pathology helps decode tumor microenvironments for precision immunotherapy. GigaPath is a novel vision transformer that can scale to gigapixel whole-slide images by adapting dilated attention for digital pathology. In joint work with Providence and UW, we’re sharing Prov-GigaPath, the first whole-slide pathology foundation model pretrained on large-scale real-world data, for advancing clinical research and discovery.

GigaPath: Whole-Slide Foundation Model for Digital Pathology

Research Forum Ep2 | Panel | Transforming the Natural Sciences with AI

Research Forum 2 | Panel Discussion: Transforming the Natural Sciences with AI

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Scaling early detection of esophageal cancer with AI

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Microsoft Health Futures

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Published Date

Publication

Extensive HLA class I allele promiscuity among viral CTL epitopes

Nicole Frahm, Karina Yusim, Todd J. Suscovich, Sharon Adams, John Sidney, Peter Hraber, Hannah S. Hewitt, Caitlyn H. Linde, Daniel G. Kavanagh, Tonia Woodberry, Leah M. Henry, Kellie Faircloth, Jennifer Listgarten, Carl Kadie, Nebojsa Jojic, Kaori Sango, Nancy V. Brown, Eunice Pae, M. Tauheed Zaman, Florian Bihl, Ashok Khatri, Mina John, Simon Mallal, Francesco M. Marincola, Bruce D. Walker, Alessandro Sette, David Heckerman, Bette T. Korber, Christian Brander

European Journal of Immunology | September 2007, Vol 37(9): pp. 2419-2433

Publication

Automatic Semantic Role Labeling (Tutorial Handout for AAAI-07)

Wen-tau Yih, Kristina Toutanova, Scott Wen-tau Yih

July 2007

Tutorial for AAAI-07

Publication

Model Checking Discrete Time Piecewise Affine Systems: Application to Gene Networks

Boyan Yordanov, Gregory Batt, Calin Belta

European Control Conference (ECC) 2007 | July 2007

Publication

Evidence of Differential HLA Class I-Mediated Viral Evolution in Functional and Accessory/Regulatory Genes of HIV-1

Zabrina L Brumme, Chanson J Brumme, David Heckerman, Bette T Korber, Marcus Daniels, Carl Kadie, Tanmoy Bhattacharya, Celia Chui, James Szinger, Theresa Mo, Robert S Hogg, Julio S. G Montaner, Nicole Frahm, Christian Brander, Bruce D Walker, P. Richard Harrigan, Jonathan M. Carlson

PLoS Pathogens | July 2007

Publication

Leveraging Hierarchical Population Structure in Discrete Association Studies

Jonathan M. Carlson, Carl Kadie, Simon Mallal, David Heckerman

PLoS One | July 2007, Vol 2: pp. e591

Project

Publication

SenseCam and memory rehabilitation

Emma Berry, Georgina Browne, Steve Hodges, Gavin Smyth, Narinder Kapur, Lyndsay Williams, Alex Butler, Ken Woodberry

July 2007

Presentation at the 4th Satellite Symposium on Neuropsychological Rehabilitation, San Sebastian, July 2007

Project

Publication

Circadian Rhythms in Stomata: Physiological and Molecular Aspects

Katharine E Hubbard, Carlos T Hotta, Michael J Gardner, Seong Jin Baek, Neil Dalchau, Suhita Dontamala, Antony N. Dodd, Alex AR Webb

Rhythms in Plants, 8 | Published by Springer-Verlag | 2007 | Rhythms in Plants edition

ISBN: 978-3-540-68069-7

Publication

SCOPE: a web server for practical de novo motif discovery

Jonathan M. Carlson, Arijit Chakravarty, Rhadika S. Khetani, Charles E. DeZiel, Robert H. Gross

Nucleic Acids Research | July 2007, Vol 35: pp. W259-264

Publication

Haptic Simulation of Bone Placement Based on Boxel Models

A.J. Brush, Brian Meyers, Dan Morris

CARS 2007 Proceedings of the 21th Computer Assisted Radiology and Surgery CARS, 2007 | June 2007

Publication

Predictive Modeling of Signaling Crosstalk during C. elegans Vulval Development

Jasmin Fisher, Nir Peterman, Alex Hajnal, Thomas A. Henzinger

PLoS Computational Biology | May 2007

Medical, health, and genomics

Highlights